STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY31488.1Tetratricopeptide repeat-containing protein. (435 aa)    
Predicted Functional Partners:
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.828
SDY64245.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.753
SDY31522.1
Hypothetical protein.
       0.752
SDY31456.1
Uncharacterized membrane protein.
       0.737
SDZ13110.1
YycH protein.
  
     0.690
SDY34617.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.673
SDY99706.1
S-layer homology domain-containing protein.
  
     0.670
SDY25204.1
Gas vesicle protein.
  
     0.664
SDY31398.1
Nicotinamidase-related amidase.
       0.658
SDY31427.1
Competence protein ComEC.
       0.647
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.