STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY22548.1Chemotaxis protein CheX. (155 aa)    
Predicted Functional Partners:
SDY22578.1
Chemotaxis protein CheX.
 
  
  0.982
SDY22608.1
Two-component system, chemotaxis family, response regulator CheY.
  
 
 0.900
SDY22780.1
Two-component system, chemotaxis family, sensor kinase CheA.
   
 0.895
SDY51146.1
PAS domain S-box-containing protein.
  
 0.889
SDY32923.1
Hypothetical protein.
   
 0.827
SDY22522.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
     0.796
SDY26965.1
Hypothetical protein.
   
 0.792
SDY51003.1
Hypothetical protein.
   
 0.788
SDY51077.1
PAS domain S-box-containing protein.
   
 0.788
SDY66662.1
PAS domain S-box-containing protein.
   
 0.788
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.