STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY43584.1Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC. (164 aa)    
Predicted Functional Partners:
SDY91450.1
Flagellar motor switch protein FliN/FliY.
    
   0.864
SDY43552.1
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.778
SDY43617.1
Pyruvate formate lyase activating enzyme.
       0.686
SDY91608.1
Flagellar basal-body rod modification protein FlgD.
    
   0.647
fliE
Flagellar hook-basal body complex protein FliE.
    
   0.647
SDY43645.1
Hypothetical protein.
       0.610
SDY88754.1
Chemotaxis protein CheC.
    
   0.602
SDY91118.1
Chemotaxis protein CheC.
    
   0.602
SDY22694.1
MCP methyltransferase, CheR-type.
    
   0.598
SDY50673.1
Chemotaxis protein methyltransferase CheR.
    
   0.598
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.