STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY47943.1Rubrerythrin. (164 aa)    
Predicted Functional Partners:
SDY33581.1
NAD(P)H-flavin reductase.
   
 
 0.631
pyrK
Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.623
SDY78443.1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.613
SDY33647.1
Coenzyme F420-reducing hydrogenase, delta subunit.
    
   0.601
SDY74787.1
4Fe-4S binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
    
   0.596
SDY47978.1
Probable phosphoglycerate mutase.
       0.572
SDY48015.1
Chloramphenicol-sensitive protein RarD.
       0.572
SDY47912.1
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
     0.555
SDY47874.1
Rubrerythrin.
 
  
 0.496
SDY33186.1
Predicted oxidoreductase of the aldo/keto reductase family.
    
   0.493
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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