STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY52262.1Adenylyltransferase and sulfurtransferase. (390 aa)    
Predicted Functional Partners:
SDY52226.1
Ubiquitin-conjugating enzyme.
   
 0.989
SDZ07534.1
Sulfur carrier protein ThiS.
  
 0.956
SDY79607.1
Molybdopterin converting factor, small subunit.
  
 0.938
SDY52193.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
 
 0.910
thiE
Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
 
 
 0.804
SDY52293.1
WXG100 protein secretion system (Wss), protein YukD.
       0.794
SDZ12432.1
MoaE protein.
  
 0.793
SDY72747.1
Glyoxylase, beta-lactamase superfamily II.
    
 0.769
SDY73027.1
tRNA A37 threonylcarbamoyladenosine dehydratase.
 
 0.754
SDY45493.1
Hypothetical protein.
  
 
 0.750
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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