STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY40078.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (609 aa)    
Predicted Functional Partners:
SDY40050.1
Hypothetical protein.
    
  0.791
SDY30144.1
Hypothetical protein.
    
 0.638
SDY62535.1
Polyphosphate kinase 2, PA0141 family.
   
    0.581
SDY40113.1
Zinc dependent phospholipase C.
       0.548
SDY51492.1
XTP/dITP diphosphohydrolase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
      0.547
SDY40018.1
Phosphate butyryltransferase.
       0.501
SDY75345.1
Permease of the drug/metabolite transporter (DMT) superfamily.
   
    0.491
SDY87460.1
Oxygen-independent coproporphyrinogen-3 oxidase.
 
  
 0.478
SDZ19755.1
Methyltransferase domain-containing protein.
  
 
 0.448
SDY40142.1
Hypothetical protein.
       0.420
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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