STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY58104.1methylmalonyl-CoA epimerase. (136 aa)    
Predicted Functional Partners:
SDY58170.1
methylmalonyl-CoA mutase, C-terminal domain.
  
 0.999
SDY58139.1
LAO/AO transport system kinase.
   
 0.996
SDY58070.1
methylmalonyl-CoA decarboxylase alpha subunit.
 
 
 0.995
SDY58201.1
methylmalonyl-CoA mutase.
 
  
 0.992
SDY34617.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.898
SDZ04217.1
Hypothetical protein.
  
 
 0.782
SDY62939.1
Aromatic-amino-acid transaminase.
  
 
 0.708
SDY58011.1
Biotin carboxyl carrier protein.
 
 
 0.679
SDY29087.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.668
SDY40949.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.668
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.