STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY62416.1Two component, sigma54 specific, transcriptional regulator, Fis family. (461 aa)    
Predicted Functional Partners:
SDZ04803.1
PAS domain S-box-containing protein.
 
 0.965
SDY51146.1
PAS domain S-box-containing protein.
  
0.953
SDY62434.1
PAS domain-containing protein.
 0.952
SDY26965.1
Hypothetical protein.
  
 0.950
SDY91450.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.936
SDY64245.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.918
SDY32923.1
Hypothetical protein.
  
 0.907
SDY65903.1
Two-component system, NarL family, sensor histidine kinase EvgS.
  
 0.905
SDZ04820.1
PAS domain S-box-containing protein.
  
 0.893
SDY51003.1
Hypothetical protein.
  
 0.889
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.