STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY75128.1MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain. (295 aa)    
Predicted Functional Partners:
SDY75099.1
Predicted Fe-Mo cluster-binding protein, NifX family.
 
  
 0.967
SDY75207.1
Predicted Fe-Mo cluster-binding protein, NifX family.
  
 0.966
SDY75070.1
Predicted DNA-binding protein, UPF0251 family; Belongs to the UPF0251 family.
 
     0.925
SDY34617.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.916
SDY80283.1
Formate dehydrogenase major subunit.
  
 0.904
SDY75157.1
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain.
 
    
0.890
SDY75182.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 
 0.890
SDY67668.1
NADH-quinone oxidoreductase subunit F.
    
 0.827
SDY67643.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
   
 0.799
SDY46076.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
    
 0.791
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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