STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY72035.1TadE-like protein. (182 aa)    
Predicted Functional Partners:
SDY72094.1
Flp pilus assembly protein CpaB.
  
  
 0.914
SDY72186.1
Tight adherence protein B.
  
  
 0.817
SDY72065.1
Hypothetical protein.
       0.793
SDY72151.1
Pilus assembly protein CpaF.
  
  
 0.784
SDY72217.1
Tight adherence protein C.
  
    0.745
SDY72003.1
TadE-like protein.
       0.650
SDZ06994.1
Pilus assembly protein Flp/PilA.
  
  
 0.602
SDY71949.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
       0.518
SDY72120.1
Pilus assembly protein CpaE.
     
 0.514
SDY76437.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
  
 0.506
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.