STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY88411.1Hypothetical protein. (533 aa)    
Predicted Functional Partners:
SDY88267.1
Type II secretion system protein E (GspE).
  
 0.919
SDY88456.1
Hypothetical protein.
     
 0.797
SDY88438.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.789
SDY88318.1
Type IV pilus assembly protein PilC.
  
  
 0.736
SDZ03924.1
Type II secretion system protein F (GspF).
  
  
 0.736
SDY88810.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.662
SDY98268.1
Helix-hairpin-helix domain-containing protein.
  
  
 0.621
SDY91793.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.598
SDY86855.1
Competence protein ComEA.
  
  
 0.597
SDY71949.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
  
  
 0.551
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.