Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDY89015.1 | SDY89058.1 | SAMN05192546_105152 | SAMN05192546_105154 | Xaa-Pro aminopeptidase. | Hypothetical protein. | 0.758 |
SDY89015.1 | SDY89080.1 | SAMN05192546_105152 | SAMN05192546_105155 | Xaa-Pro aminopeptidase. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.563 |
SDY89015.1 | SDY89126.1 | SAMN05192546_105152 | SAMN05192546_105157 | Xaa-Pro aminopeptidase. | N6-L-threonylcarbamoyladenine synthase. | 0.475 |
SDY89015.1 | SDY89198.1 | SAMN05192546_105152 | SAMN05192546_105160 | Xaa-Pro aminopeptidase. | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.526 |
SDY89015.1 | SDY89222.1 | SAMN05192546_105152 | SAMN05192546_105161 | Xaa-Pro aminopeptidase. | Hypothetical protein. | 0.413 |
SDY89015.1 | efp | SAMN05192546_105152 | SAMN05192546_105153 | Xaa-Pro aminopeptidase. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.868 |
SDY89015.1 | nusB | SAMN05192546_105152 | SAMN05192546_105156 | Xaa-Pro aminopeptidase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.493 |
SDY89015.1 | xseA | SAMN05192546_105152 | SAMN05192546_105158 | Xaa-Pro aminopeptidase. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.471 |
SDY89015.1 | xseB | SAMN05192546_105152 | SAMN05192546_105159 | Xaa-Pro aminopeptidase. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.536 |
SDY89058.1 | SDY89015.1 | SAMN05192546_105154 | SAMN05192546_105152 | Hypothetical protein. | Xaa-Pro aminopeptidase. | 0.758 |
SDY89058.1 | SDY89080.1 | SAMN05192546_105154 | SAMN05192546_105155 | Hypothetical protein. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.675 |
SDY89058.1 | SDY89126.1 | SAMN05192546_105154 | SAMN05192546_105157 | Hypothetical protein. | N6-L-threonylcarbamoyladenine synthase. | 0.783 |
SDY89058.1 | SDY89198.1 | SAMN05192546_105154 | SAMN05192546_105160 | Hypothetical protein. | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.629 |
SDY89058.1 | SDY89222.1 | SAMN05192546_105154 | SAMN05192546_105161 | Hypothetical protein. | Hypothetical protein. | 0.484 |
SDY89058.1 | efp | SAMN05192546_105154 | SAMN05192546_105153 | Hypothetical protein. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.848 |
SDY89058.1 | nusB | SAMN05192546_105154 | SAMN05192546_105156 | Hypothetical protein. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.630 |
SDY89058.1 | xseA | SAMN05192546_105154 | SAMN05192546_105158 | Hypothetical protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.630 |
SDY89058.1 | xseB | SAMN05192546_105154 | SAMN05192546_105159 | Hypothetical protein. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.675 |
SDY89080.1 | SDY89015.1 | SAMN05192546_105155 | SAMN05192546_105152 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | Xaa-Pro aminopeptidase. | 0.563 |
SDY89080.1 | SDY89058.1 | SAMN05192546_105155 | SAMN05192546_105154 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | Hypothetical protein. | 0.675 |
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