STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY91041.1Hypothetical protein. (473 aa)    
Predicted Functional Partners:
SDY91118.1
Chemotaxis protein CheC.
 
    0.886
SDY91216.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
 
    0.872
SDY91479.1
Flagellar motor switch protein FliM.
 
     0.856
SDY91264.1
Flagellar biosynthesis protein FlhF.
 
   
 0.835
cheD
Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
     0.829
SDY91069.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
    0.827
SDY91552.1
Flagellar protein FlbD.
 
   
 0.790
SDY91450.1
Flagellar motor switch protein FliN/FliY.
 
     0.786
SDY62124.1
Flagellar operon protein TIGR03826.
 
     0.774
SDY61189.1
Hypothetical protein.
 
     0.770
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.