STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ09828.1Transcriptional regulator, GntR family. (233 aa)    
Predicted Functional Partners:
SDY65722.1
GntR family transcriptional regulator.
  
  
 0.776
SDZ09725.1
DNA-binding transcriptional regulator, GntR family.
 
  
 0.660
SDY80283.1
Formate dehydrogenase major subunit.
    
 0.652
SDY33842.1
DNA-binding transcriptional regulator, GntR family.
 
  
 0.640
SDY65225.1
Cupin domain protein.
 
  
 0.516
SDY64625.1
DNA-binding transcriptional regulator, IclR family.
 
  
 0.513
SDY72295.1
AraC-type DNA-binding protein.
 
  
 0.511
SDY45588.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
 0.499
SDZ09814.1
Threonine dehydratase.
       0.496
SDY49272.1
DNA-binding transcriptional regulator, IclR family.
 
  
 0.495
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.