STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ07579.1Glycine betaine/proline transport system substrate-binding protein. (345 aa)    
Predicted Functional Partners:
SDY64807.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.997
SDY64840.1
Glycine betaine/proline transport system permease protein.
 
 0.996
SDY52152.1
RING finger family protein 1.
  
 
 0.736
SDZ07564.1
DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family.
 
   
 0.687
SDZ05079.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.544
SDY64870.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.539
purN
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.491
SDY27965.1
Threonine/homoserine efflux transporter RhtA.
  
 
  0.485
SDZ05043.1
acyl-CoA thioester hydrolase.
 
     0.433
SDZ16049.1
Peptide/nickel transport system substrate-binding protein.
  
  
  0.433
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.