STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ20858.1Nitrogenase component 1 type Oxidoreductase. (386 aa)    
Predicted Functional Partners:
SDZ20898.1
Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family.
 
 0.995
SDZ20879.1
Nitrogenase component 1 type Oxidoreductase.
     0.991
SDZ20954.1
Iron complex transport system substrate-binding protein.
 
     0.894
SDZ20841.1
Iron complex transport system substrate-binding protein.
 
     0.884
SDZ20918.1
Iron complex transport system ATP-binding protein.
 
     0.879
SDZ20935.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.823
SDY25234.1
Glutamine synthetase.
   
 
 0.548
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.534
SDY80283.1
Formate dehydrogenase major subunit.
   
 
 0.514
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
    
 0.487
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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