STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ21432.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
SDY34617.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.738
SDY44537.1
iron(III) transport system permease protein.
 
     0.623
SDY45588.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.620
SDZ21453.1
Copper amine oxidase N-terminal domain-containing protein.
       0.515
SDY44568.1
iron(III) transport system substrate-binding protein.
 
     0.502
SDZ21414.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.477
SDZ05417.1
iron(III) transport system permease protein.
 
     0.430
SDZ05437.1
iron(III) transport system substrate-binding protein.
 
     0.418
SDZ21399.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.412
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.