STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ21505.1Hypothetical protein. (420 aa)    
Predicted Functional Partners:
SDZ21558.1
Hypothetical protein.
 
 
 0.981
SDZ21538.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.967
SDZ21488.1
Sporulation related domain-containing protein.
 
     0.940
SDY98855.1
Hypothetical protein.
 
 
 0.936
SDY40050.1
Hypothetical protein.
 
 
 0.892
SDY76437.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.878
SDY98639.1
Sulfotransferase family protein.
  
 
 0.873
SDY98748.1
Sulfotransferase domain-containing protein.
  
 
 0.873
SDZ03152.1
CRISPR-associated protein, TIGR02710 family.
  
 
 0.869
SDZ20737.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.785
Your Current Organism:
Tindallia californiensis
NCBI taxonomy Id: 159292
Other names: ATCC BAA-393, CIP 107910, DSM 14871, T. californiensis, Tindallia californiensis Pikuta et al. 2003, Tindallia sp. APO, strain APO
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