STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPC84182.1Toxic cation resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
OPC82275.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.786
OPC84845.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.778
OPC84183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OPC80893.1
Tellurium resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.765
OPC84184.1
RNA ligase (ATP); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
OPC80892.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.763
B4N89_36890
DNA-binding response regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.754
OPC83605.1
Stress-induced protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.748
B4N89_07980
Chemical-damaging agent resistance protein C; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
OPC83366.1
Stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.736
Your Current Organism:
Streptomyces scabrisporus
NCBI taxonomy Id: 159449
Other names: DSM 41855, JCM 11712, NBRC 100760, NRRL B-24202, S. scabrisporus, Streptomyces scabrisporus Xu et al. 2004, Streptomyces sp. KM-4927, strain KM-4927
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