STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPC84291.123S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)    
Predicted Functional Partners:
OPC78084.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.867
OPC84292.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
  
 0.765
OPC84022.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.733
OPC77137.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.691
OPC77947.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
    
 0.668
OPC84290.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.500
OPC78719.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.474
OPC78577.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.463
OPC79014.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.463
OPC80293.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.454
Your Current Organism:
Streptomyces scabrisporus
NCBI taxonomy Id: 159449
Other names: DSM 41855, JCM 11712, NBRC 100760, NRRL B-24202, S. scabrisporus, Streptomyces scabrisporus Xu et al. 2004, Streptomyces sp. KM-4927, strain KM-4927
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