STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0054Conserved hypothetical protein. (174 aa)    
Predicted Functional Partners:
LBAT_0055
Conserved hypothetical protein.
 
     0.962
LBAT_0056
Ribonucleoside triphosphate reductase.
 
     0.896
LBAT_0053
Cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
     0.862
ecfT
Cobalt ABC transporter permease component; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.797
LBAT_1609
ABC transporter permease component.
 
 
 0.763
LBAT_0110
ABC transporter permease component.
  
 
 0.728
LBAT_0661
Oligopeptide ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
  
  
 0.575
ecfA
Cobalt ABC transporter ATP-binding component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
   0.543
ecfA-2
Cobalt ABC transporter ATP-binding component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
   0.543
LBAT_0057
Esterase.
 
     0.506
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.