Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0121Conserved hypothetical protein; Belongs to the HesB/IscA family. (134 aa)    
Predicted Functional Partners:
LBAT_0420
Conserved hypothetical protein.
  
     0.674
LBAT_0180
Conserved hypothetical protein.
  
     0.596
LBAT_1418
Conserved hypothetical protein.
  
     0.582
LBAT_0396
2',3'-cyclic nucleotide 3'-phosphodiesterase.
  
     0.563
LBAT_0188
Conserved hypothetical protein.
  
     0.561
LBAT_0120
Cation transport protein.
 
     0.543
LBAT_1004
Conserved hypothetical protein.
  
     0.538
LBAT_0129
Conserved hypothetical protein.
 
     0.530
LBAT_1459
Conserved hypothetical protein.
  
     0.525
trxA
Thioredoxin; Belongs to the thioredoxin family.
   
    0.493
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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