Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0166PTS system IIA component. (160 aa)    
Predicted Functional Partners:
LBAT_0303
PTS system galactitol-specific IIC component.
 
  
 0.912
LBAT_1213
Phosphocarrier protein HPr.
  
 
 0.912
LBAT_0302
PTS system galactitol-specific IIB component.
 
  
 0.650
LBAT_1588
Aryl-alcohol dehydrogenase.
  
    0.536
LBAT_0165
Nucleoside 2-deoxyribosyltransferase.
       0.533
pfkB
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.530
LBAT_0306
Aldolase.
 
  
 0.475
LBAT_1147
ATP-binding protein; Displays ATPase and GTPase activities.
  
    0.474
LBAT_0064
PTS system trehalose-specific IIABC components.
   
  
 0.453
LBAT_0263
PTS system sucrose-specific IIBC components.
   
  
 0.453
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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