Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0191Conserved hypothetical protein. (85 aa)    
Predicted Functional Partners:
LBAT_0194
RNA polymerase sigma factor.
 
     0.762
LBAT_1219
Conserved hypothetical protein.
  
     0.700
LBAT_0129
Conserved hypothetical protein.
  
     0.635
LBAT_1221
Conserved hypothetical protein.
  
     0.613
LBAT_0190
Conserved hypothetical protein.
       0.606
LBAT_1093
Conserved hypothetical protein.
  
     0.599
LBAT_0189
Conserved hypothetical protein.
 
     0.583
LBAT_0396
2',3'-cyclic nucleotide 3'-phosphodiesterase.
  
     0.583
LBAT_1519
Putative cell division protein.
  
     0.512
LBAT_1193
Conserved hypothetical protein.
  
     0.484
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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