STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0196Amidase. (388 aa)    
Predicted Functional Partners:
LBAT_0195
N-acetylmuramidase.
 
   
0.748
LBAT_1338
Conserved hypothetical protein.
 
     0.743
LBAT_0848
Enterolysin A.
  
  
 0.710
LBAT_0862
Conserved hypothetical protein.
  
     0.674
LBAT_0258
Penicillin-binding protein.
  
     0.652
LBAT_0074
Penicillin-binding protein.
  
     0.649
LBAT_0532
ABC transporter permease component.
  
     0.643
LBAT_1364
Conserved hypothetical protein.
  
     0.634
LBAT_1579
Conserved hypothetical protein.
  
   
 0.631
LBAT_1367
Beta-lactamase.
  
   
 0.627
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.