STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0303PTS system galactitol-specific IIC component. (530 aa)    
Predicted Functional Partners:
LBAT_0301
PTS system galactitol-specific IIA component.
 
 
 0.994
LBAT_0302
PTS system galactitol-specific IIB component.
 
  
 0.965
LBAT_0306
Aldolase.
 
   
 0.939
LBAT_0166
PTS system IIA component.
 
  
 0.912
LBAT_1213
Phosphocarrier protein HPr.
    
  0.907
LBAT_0305
Conserved hypothetical protein.
     
 0.745
LBAT_0304
Hypothetical protein.
     
 0.724
LBAT_1588
Aryl-alcohol dehydrogenase.
 
  
 0.661
LBAT_1437
PTS system fructose-specific IIABC components.
  
  
 0.514
LBAT_0786
Putative transcriptional antiterminator.
 
  
 0.475
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.