STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0523Penicillin-binding protein. (685 aa)    
Predicted Functional Partners:
LBAT_1025
Cell division protein FtsI/penicillin-binding protein.
 
 0.984
LBAT_0569
Penicillin-binding protein.
 
 0.968
LBAT_0517
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.934
LBAT_0881
Penicillin binding protein 1A.
  
  
 
0.924
LBAT_0524
Conserved hypothetical protein; Belongs to the UPF0342 family.
       0.785
LBAT_0525
Phosphoesterase.
       0.778
LBAT_0526
DNA repair ATPase.
       0.778
LBAT_0527
CMP-binding factor.
       0.778
LBAT_0996
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 
 0.724
LBAT_1049
Cell division membrane protein; Belongs to the SEDS family.
 
 
 
 0.716
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.