STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0661Oligopeptide ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily. (340 aa)    
Predicted Functional Partners:
LBAT_0663
Oligopeptide ABC transporter permease component.
 0.999
LBAT_0664
Oligopeptide ABC transporter permease component.
 
 0.999
LBAT_0662
Oligopeptide ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
 
 
0.997
LBAT_0665
Oligopeptide ABC trasporter substrate binding component.
 
 
 0.994
LBAT_1441
ABC transporter ATP-binding component.
 
    
0.900
LBAT_0729
ABC transporter ATP-binding component.
 
     
0.856
LBAT_1435
Metal ion ABC transporter ATP-binding component.
 
    
 0.615
LBAT_0054
Conserved hypothetical protein.
  
  
 0.575
LBAT_0111
ABC transporter ATP-binding component.
  
  
0.575
LBAT_1610
ABC transporter ATP-binding component.
  
  
0.575
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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