STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0665Oligopeptide ABC trasporter substrate binding component. (588 aa)    
Predicted Functional Partners:
LBAT_0663
Oligopeptide ABC transporter permease component.
 
 0.996
LBAT_0664
Oligopeptide ABC transporter permease component.
 
 0.996
LBAT_0661
Oligopeptide ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
 
 
 0.994
LBAT_0662
Oligopeptide ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
 
 
 0.991
LBAT_0132
Amino acid ABC transporter permease component.
 
 
 0.649
LBAT_0153
Glutamine ABC transporter substrate binding and permease components.
  
 
 0.596
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.552
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
     
 0.543
ftsY
Signal recognition particle GTPase; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.539
LBAT_0669
Dipeptidase.
       0.418
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.