STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0812Phage integrase; Belongs to the 'phage' integrase family. (311 aa)    
Predicted Functional Partners:
LBAT_0813
Restriction-modification system S subunit.
  
 0.927
LBAT_0810
Restriction-modification system M subunit.
 
   
 0.757
LBAT_0811
Restriction modification system DNA specificity domain protein.
 
     0.705
LBAT_0814
Restriction-modification system restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.607
LBAT_1160
Competence protein.
   
    0.480
LBAT_0240
Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.446
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.446
LBAT_0251
Pur operon repressor.
   
    0.411
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.411
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.411
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.