Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LBAT_0840 | dnaG | LBAT_0840 | LBAT_0846 | Phosphate starvation-induced protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.490 |
| LBAT_0840 | era | LBAT_0840 | LBAT_0842 | Phosphate starvation-induced protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.910 |
| LBAT_0840 | glyQ | LBAT_0840 | LBAT_0844 | Phosphate starvation-induced protein. | glycyl-tRNA synthase alpha subunit. | 0.619 |
| LBAT_0840 | glyS | LBAT_0840 | LBAT_0845 | Phosphate starvation-induced protein. | glycyl-tRNA synthase beta subunit. | 0.619 |
| LBAT_0840 | recO | LBAT_0840 | LBAT_0843 | Phosphate starvation-induced protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.934 |
| LBAT_0840 | sigA | LBAT_0840 | LBAT_0847 | Phosphate starvation-induced protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.525 |
| LBAT_0840 | ybeY | LBAT_0840 | LBAT_0841 | Phosphate starvation-induced protein. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.979 |
| dnaG | LBAT_0840 | LBAT_0846 | LBAT_0840 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Phosphate starvation-induced protein. | 0.490 |
| dnaG | era | LBAT_0846 | LBAT_0842 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.524 |
| dnaG | glyQ | LBAT_0846 | LBAT_0844 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | glycyl-tRNA synthase alpha subunit. | 0.799 |
| dnaG | glyS | LBAT_0846 | LBAT_0845 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | glycyl-tRNA synthase beta subunit. | 0.799 |
| dnaG | metG | LBAT_0846 | LBAT_0246 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | methionyl-tRNA synthase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.482 |
| dnaG | recO | LBAT_0846 | LBAT_0843 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.553 |
| dnaG | sigA | LBAT_0846 | LBAT_0847 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.995 |
| dnaG | ybeY | LBAT_0846 | LBAT_0841 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.605 |
| era | LBAT_0840 | LBAT_0842 | LBAT_0840 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Phosphate starvation-induced protein. | 0.910 |
| era | dnaG | LBAT_0842 | LBAT_0846 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.524 |
| era | glyQ | LBAT_0842 | LBAT_0844 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | glycyl-tRNA synthase alpha subunit. | 0.628 |
| era | glyS | LBAT_0842 | LBAT_0845 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | glycyl-tRNA synthase beta subunit. | 0.640 |
| era | metG | LBAT_0842 | LBAT_0246 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | methionyl-tRNA synthase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.477 |
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