STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_0877Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
dinG
ATP-dependent DNA helicase; 3'-5' exonuclease.
 
    0.888
rexB
ATP-dependent exonuclease subunit B; ATP-dependent DNA helicase.
 
     0.843
addA
ATP-dependent exonuclease subunit A; ATP-dependent DNA helicase.
       0.804
asnS
asparaginyl-tRNA synthase.
       0.747
LBAT_0873
Mevalonate kinase.
       0.685
LBAT_0872
Diphosphomevalonate decarboxylase.
       0.682
LBAT_0099
Conserved hypothetical protein.
  
     0.659
LBAT_0879
DNA replication protein DnaD.
       0.646
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.636
LBAT_0569
Penicillin-binding protein.
  
     0.633
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.