Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LBAT_0936N-acetylmuramidase. (142 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
  
    0.682
LBAT_0937
Conserved hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
 
     0.660
LBAT_1367
Beta-lactamase.
  
   
 0.640
LBAT_0848
Enterolysin A.
 
   
 0.618
LBAT_1338
Conserved hypothetical protein.
 
   
 0.607
LBAT_0862
Conserved hypothetical protein.
  
     0.592
LBAT_0934
30S ribosomal protein S1.
  
    0.540
LBAT_1364
Conserved hypothetical protein.
  
     0.513
LBAT_0243
Conserved hypothetical protein.
 
     0.482
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.473
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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