STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreDRod shape-determining protein MreD. (178 aa)    
Predicted Functional Partners:
LBAT_1034
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.793
LBAT_0985
Conserved hypothetical protein.
  
     0.727
LBAT_1133
Conserved hypothetical protein.
  
     0.723
LBAT_0295
Conserved hypothetical protein.
  
     0.685
LBAT_1364
Conserved hypothetical protein.
  
     0.667
LBAT_1419
Conserved hypothetical protein.
  
     0.667
LBAT_1221
Conserved hypothetical protein.
  
     0.648
LBAT_0396
2',3'-cyclic nucleotide 3'-phosphodiesterase.
  
     0.646
LBAT_0151
Transcriptional regulator.
  
     0.643
LBAT_1035
Rod shape-determining protein MreB.
       0.641
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.