STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1101Amino acid transport protein. (539 aa)    
Predicted Functional Partners:
LBAT_1100
Conserved hypothetical protein.
 
     0.722
LBAT_1187
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 
 0.622
LBAT_0862
Conserved hypothetical protein.
  
     0.528
LBAT_1102
Conserved hypothetical protein.
   
   0.513
LBAT_0576
Aluminum resistance protein.
  
     0.496
LBAT_1103
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
       0.492
LBAT_0979
Putative amino acid permease-associated protein.
  
     0.479
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.