Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1161Competence protein. (427 aa)    
Predicted Functional Partners:
LBAT_1098
Competence protein.
   
  
 0.924
LBAT_1160
Competence protein.
  
  
 0.914
LBAT_0991
Competence protein ComEA.
   
  
 0.866
LBAT_1096
Competence protein.
  
  
 0.859
LBAT_1097
Competence protein.
   
  
 0.801
LBAT_0921
DNA processing protein chain A.
  
  
 0.788
LBAT_0008
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.777
LBAT_0990
Competence protein ComEC.
   
  
 0.747
LBAT_1162
Conserved hypothetical protein.
     
 0.709
LBAT_0350
Prepilin peptidase.
   
  
 0.662
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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