STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1265ABC transporter permease component. (192 aa)    
Predicted Functional Partners:
LBAT_0110
ABC transporter permease component.
 
  
 0.949
LBAT_0111
ABC transporter ATP-binding component.
 
  
 0.887
LBAT_1367
Beta-lactamase.
  
     0.649
LBAT_0151
Transcriptional regulator.
  
     0.544
LBAT_1610
ABC transporter ATP-binding component.
  
  
 0.523
LBAT_1017
Cell division membrane protein.
  
     0.522
ecfT
Cobalt ABC transporter permease component; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
  
 0.498
LBAT_1364
Conserved hypothetical protein.
  
     0.459
LBAT_1609
ABC transporter permease component.
  
  
 0.450
LBAT_0054
Conserved hypothetical protein.
  
  
 0.439
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.