STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1345NADPH-flavin oxidoreductase; Belongs to the flavin oxidoreductase frp family. (252 aa)    
Predicted Functional Partners:
LBAT_0710
Riboflavin kinase; Belongs to the ribF family.
    
 0.914
LBAT_1462
Oxidoreductase.
     
 0.902
LBAT_1463
Oxidoreductase.
     
 0.902
LBAT_0622
biotin-[acetyl-CoA-carboxylase] ligase.
  
    0.550
LBAT_1346
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.530
tadA
Cytidine-deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.513
LBAT_0743
Truncated ABC transporter permease component.
  
  
 0.512
LBAT_0744
Truncated ABC transporter permease component.
  
  
 0.512
LBAT_1344
Putative ABC transporter permease component.
  
  
 0.512
LBAT_1579
Conserved hypothetical protein.
  
  
 0.500
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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