Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1368Cationic transport protein. (305 aa)    
Predicted Functional Partners:
LBAT_1367
Beta-lactamase.
 
     0.819
LBAT_1338
Conserved hypothetical protein.
 
   
 0.660
LBAT_1366
Transcriptional regulator.
 
  
 0.599
LBAT_1365
Permease.
 
     0.581
LBAT_1162
Conserved hypothetical protein.
  
    0.485
LBAT_1369
Glycerol-3-phosphate ABC transporter substrate binding component.
       0.480
LBAT_0914
Conserved hypothetical protein.
  
     0.478
LBAT_1364
Conserved hypothetical protein.
 
     0.427
LBAT_1372
Sugar ABC transporter permease component.
     
 0.421
LBAT_1373
Sugar ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
  
    0.403
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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