STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1375DNA nuclease. (294 aa)    
Predicted Functional Partners:
LBAT_1374
Dipeptidase.
       0.668
LBAT_0990
Competence protein ComEC.
 
   
 0.637
LBAT_1376
DNA polymerase III.
       0.545
LBAT_1377
Conserved hypothetical protein.
       0.535
mreD
Rod shape-determining protein MreD.
  
     0.512
LBAT_1221
Conserved hypothetical protein.
 
     0.493
LBAT_0136
methylated-DNA-protein-cysteine S-methyltransferase.
  
  
 0.488
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.482
LBAT_0605
Conserved hypothetical protein.
 
     0.474
LBAT_1004
Conserved hypothetical protein.
  
     0.446
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.