Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1377Conserved hypothetical protein. (274 aa)    
Predicted Functional Partners:
LBAT_1500
Putative RNase III regulator.
 
  0.911
LBAT_1376
DNA polymerase III.
 
     0.848
LBAT_1370
Putative metallo-beta-lactamase.
 
 
   0.641
LBAT_0157
Conserved hypothetical protein.
  
     0.597
LBAT_0629
Sodium ATP synthase subunit.
  
     0.570
LBAT_1375
DNA nuclease.
       0.534
LBAT_0112
Transcriptional regulator.
 
    0.507
LBAT_0856
Conserved hypothetical protein.
  
     0.493
LBAT_1092
DNA methylase.
   
    0.493
LBAT_1079
Integral membrane protein.
  
     0.462
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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