Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1399Conserved hypothetical protein. (102 aa)    
Predicted Functional Partners:
LBAT_1401
Truncated DNA polymerase.
 
     0.898
LBAT_1400
Truncated DNA polymerase.
 
     0.882
LBAT_0234
DNA polymerase; Belongs to the DNA polymerase type-Y family.
 
     0.712
LBAT_1602
Conserved hypothetical protein.
 
     0.684
LBAT_1603
Conserved hypothetical protein.
 
     0.648
LBAT_1398
Transposase.
       0.524
LBAT_1397
PTS system IIC component.
       0.429
LBAT_1402
Conserved hypothetical protein.
       0.415
LBAT_1403
Conserved hypothetical protein.
       0.401
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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