STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1439Fructose operon repressor. (252 aa)    
Predicted Functional Partners:
pfkB
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.975
LBAT_1437
PTS system fructose-specific IIABC components.
 
  
 0.950
LBAT_0300
Transcriptional regulator.
  
     0.772
LBAT_0789
PTS system IIC component.
 
  
 0.675
LBAT_1356
PTS system mannose-specific IID component.
 
  
 0.585
LBAT_0481
Catabolite control protein.
  
  
 0.574
LBAT_0773
Transcriptional regulator.
  
  
 0.464
LBAT_1436
Metal ion ABC transporter substrate binding component; Belongs to the bacterial solute-binding protein 9 family.
       0.464
LBAT_1434
Metal ion ABC transporter permease component.
       0.401
LBAT_1435
Metal ion ABC transporter ATP-binding component.
       0.401
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.