Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LBAT_1446Two-component sensor kinase. (384 aa)    
Predicted Functional Partners:
LBAT_1447
Two-component response regulator.
 
 0.985
LBAT_0097
Two-component response regulator.
 
 0.906
LBAT_0555
Two-component response regulator.
 
 0.899
LBAT_1077
Truncated response regulator.
 
 0.877
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
  
    0.684
LBAT_1444
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
       0.651
LBAT_0099
Conserved hypothetical protein.
 
  
 0.579
LBAT_0334
Conserved hypothetical protein.
  
     0.531
LBAT_0101
Conserved hypothetical protein.
  
  
 0.484
LBAT_1448
Transposase.
       0.477
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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