STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
LBAT_1484Putative ribose ABC transporter substrate binding component. (349 aa)    
Predicted Functional Partners:
LBAT_1486
Two-component response regulator.
 
  
 0.958
LBAT_1485
Two-component sensor kinase.
 
    0.957
LBAT_1487
Conserved hypothetical protein.
 
  
 0.921
LBAT_1488
Conserved hypothetical protein.
 
  
 0.909
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.904
LBAT_1482
PTS system mannose/fructose/sorbose-specific-specific IIB component.
 
   
 0.829
LBAT_1483
PTS system mannose/fructose/sorbose-specific-specific IIA component.
 
   
 0.816
LBAT_1481
PTS system mannose/fructose/sorbose-specific-specific IIC component.
 
     0.788
LBAT_0556
Two-component sensor kinase.
    
 
 0.737
LBAT_1076
Histidine kinase.
    
 
 0.737
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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