Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LBAT_1548Amino acid permease. (467 aa)    
Predicted Functional Partners:
LBAT_1549
Truncated gamma-glutamyl-gamma-aminobutyrate hydrolase.
 
    0.788
LBAT_1550
Transposase.
       0.482
LBAT_0679
Conserved hypothetical protein.
  
 
   0.470
LBAT_0219
Conserved hypothetical protein.
  
     0.428
LBAT_1551
Truncated gamma-glutamyl-gamma-aminobutyrate hydrolase.
 
    0.427
LBAT_1200
Conserved hypothetical protein.
 
 
   0.421
LBAT_1547
Conserved hypothetical protein.
       0.411
LBAT_1552
Amino acid permease.
 
  
 0.406
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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