STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBAT_1611ABC transporter ATP-binding component. (236 aa)    
Predicted Functional Partners:
LBAT_1610
ABC transporter ATP-binding component.
  
 0.995
LBAT_1609
ABC transporter permease component.
 
 
 0.979
LBAT_1605
Conserved hypothetical protein.
 
     0.809
LBAT_1606
Conserved hypothetical protein.
 
    0.803
LBAT_1607
Conserved hypothetical protein.
 
     0.795
LBAT_1612
Conserved hypothetical protein.
       0.755
ecfA
Cobalt ABC transporter ATP-binding component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.677
LBAT_0111
ABC transporter ATP-binding component.
 
  
 0.656
LBAT_0110
ABC transporter permease component.
  
 
 0.591
ecfT
Cobalt ABC transporter permease component; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.591
Your Current Organism:
Lactobacillus acetotolerans
NCBI taxonomy Id: 1600
Other names: ATCC 43578, CCUG 32229, CIP 103180, DSM 20749, JCM 3825, L. acetotolerans, LMG 10751, LMG:10751, Lactobacillus acetitolerans, NBI 3014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.