STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001243975_00412Unannotated protein. (145 aa)    
Predicted Functional Partners:
GCA_001243975_00411
Unannotated protein.
     
 0.886
GCA_001243975_01043
Unannotated protein.
  
   
 0.616
GCA_001243975_00413
Unannotated protein.
       0.474
GCA_001243975_00414
Unannotated protein.
       0.474
GCA_001243975_00415
Unannotated protein.
       0.474
GCA_001243975_00416
Unannotated protein.
       0.471
GCA_001243975_00417
Unannotated protein.
       0.444
GCA_001243975_00996
Unannotated protein.
  
  
 0.416
Your Current Organism:
Lactobacillus agilis
NCBI taxonomy Id: 1601
Other names: CCUG 31450, CIP 101264, DSM 20509, L. agilis, LMG 9186, LMG:9186, NRRL B-14856
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.