Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GCA_001243975_00489 | hflX | GCA_001243975_00489 | GCA_001243975_00721 | Unannotated protein. | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.849 |
| GCA_001243975_00489 | rplC | GCA_001243975_00489 | GCA_001243975_00377 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.972 |
| GCA_001243975_00489 | rplD | GCA_001243975_00489 | GCA_001243975_00378 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.975 |
| GCA_001243975_00489 | rplK | GCA_001243975_00489 | GCA_001243975_00309 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.991 |
| GCA_001243975_00489 | rplM | GCA_001243975_00489 | GCA_001243975_00408 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.992 |
| GCA_001243975_00489 | rplQ | GCA_001243975_00489 | GCA_001243975_00403 | Unannotated protein. | Unannotated protein. | 0.990 |
| GCA_001243975_00489 | rplS | GCA_001243975_00489 | GCA_001243975_00598 | Unannotated protein. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.993 |
| GCA_001243975_00489 | rplU | GCA_001243975_00489 | GCA_001243975_02004 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
| GCA_001243975_00489 | rplV | GCA_001243975_00489 | GCA_001243975_00382 | Unannotated protein. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.979 |
| GCA_001243975_00489 | rpmA | GCA_001243975_00489 | GCA_001243975_02002 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
| hflX | GCA_001243975_00489 | GCA_001243975_00721 | GCA_001243975_00489 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein. | 0.849 |
| hflX | rplC | GCA_001243975_00721 | GCA_001243975_00377 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.851 |
| hflX | rplD | GCA_001243975_00721 | GCA_001243975_00378 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.842 |
| hflX | rplK | GCA_001243975_00721 | GCA_001243975_00309 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.876 |
| hflX | rplM | GCA_001243975_00721 | GCA_001243975_00408 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.840 |
| hflX | rplQ | GCA_001243975_00721 | GCA_001243975_00403 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein. | 0.835 |
| hflX | rplS | GCA_001243975_00721 | GCA_001243975_00598 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.843 |
| hflX | rplU | GCA_001243975_00721 | GCA_001243975_02004 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.840 |
| hflX | rplV | GCA_001243975_00721 | GCA_001243975_00382 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.835 |
| hflX | rpmA | GCA_001243975_00721 | GCA_001243975_02002 | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.837 |
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