STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BEN83_00655Unannotated protein. (328 aa)    
Predicted Functional Partners:
BEN83_00640
Unannotated protein.
 
  
0.848
BEN83_00665
Unannotated protein; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.823
GCA_001243975_01194
Unannotated protein.
  
    0.791
BEN83_00680
Unannotated protein.
 
  
 0.727
BEN83_00645
Unannotated protein.
 
  
 0.635
BEN83_00705
Unannotated protein; Belongs to the ABC transporter superfamily.
 
  
 0.619
BEN83_00685
Unannotated protein.
 
  
 0.599
BEN83_00690
Unannotated protein.
 
    0.591
pgmB
Unannotated protein.
  
    0.566
AYP69_07090
Unannotated protein.
   
 
 0.493
Your Current Organism:
Lactobacillus agilis
NCBI taxonomy Id: 1601
Other names: CCUG 31450, CIP 101264, DSM 20509, L. agilis, LMG 9186, LMG:9186, NRRL B-14856
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.